gene expression microarray Search Results


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Biotechnology Information gene expression microarray data gse14001
Heat map of the 103 DEGs identified in the integrated <t>microarray</t> analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.
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GenomeDx Inc genome-wide microarray gene expression data
Heat map of the 103 DEGs identified in the integrated <t>microarray</t> analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.
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Heat map of the 103 DEGs identified in the integrated <t>microarray</t> analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.
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Illumina Inc microarray gene expression transcriptome datasets
Three-step identification of HCC potential biomarkers. First, DEGs using non-fusion integrative method detected. Based on ComBat approach, the batch effect between data from two main <t>microarray</t> platforms (Affymetrix and Illumina), removed. Second, to deal with a more in-depth analysis of HCC expression datasets to identify potential diagnosis and prognosis biomarkers, classification methods and biomarker recognition conducted. Third, to evaluate the diagnostic performance in classifying HCC from normal, the risk score model was developed, and to assess the prognostic value of gene biomarkers, Kaplan–Meier (KM) survival analysis performed.
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Three-step identification of HCC potential biomarkers. First, DEGs using non-fusion integrative method detected. Based on ComBat approach, the batch effect between data from two main <t>microarray</t> platforms (Affymetrix and Illumina), removed. Second, to deal with a more in-depth analysis of HCC expression datasets to identify potential diagnosis and prognosis biomarkers, classification methods and biomarker recognition conducted. Third, to evaluate the diagnostic performance in classifying HCC from normal, the risk score model was developed, and to assess the prognostic value of gene biomarkers, Kaplan–Meier (KM) survival analysis performed.
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Three-step identification of HCC potential biomarkers. First, DEGs using non-fusion integrative method detected. Based on ComBat approach, the batch effect between data from two main <t>microarray</t> platforms (Affymetrix and Illumina), removed. Second, to deal with a more in-depth analysis of HCC expression datasets to identify potential diagnosis and prognosis biomarkers, classification methods and biomarker recognition conducted. Third, to evaluate the diagnostic performance in classifying HCC from normal, the risk score model was developed, and to assess the prognostic value of gene biomarkers, Kaplan–Meier (KM) survival analysis performed.
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Illumina Inc whole-genome mouse gene expression arrays (one-dye oligonucleotide microarrays) illumina beadarray
Three-step identification of HCC potential biomarkers. First, DEGs using non-fusion integrative method detected. Based on ComBat approach, the batch effect between data from two main <t>microarray</t> platforms (Affymetrix and Illumina), removed. Second, to deal with a more in-depth analysis of HCC expression datasets to identify potential diagnosis and prognosis biomarkers, classification methods and biomarker recognition conducted. Third, to evaluate the diagnostic performance in classifying HCC from normal, the risk score model was developed, and to assess the prognostic value of gene biomarkers, Kaplan–Meier (KM) survival analysis performed.
Whole Genome Mouse Gene Expression Arrays (One Dye Oligonucleotide Microarrays) Illumina Beadarray, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Heat map of the 103 DEGs identified in the integrated microarray analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.

Journal: OncoTargets and therapy

Article Title: Integrated Analysis To Identify Molecular Biomarkers Of High-Grade Serous Ovarian Cancer

doi: 10.2147/OTT.S228678

Figure Lengend Snippet: Heat map of the 103 DEGs identified in the integrated microarray analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.

Article Snippet: Gene expression microarray data (GSE14001, GSE18520, GSE26712, GSE27651, GSE40595, and GSE54388) were downloaded from the National Center for Biotechnology Information Gene Expression Omnibus (GEO) database ( http://www.ncbi.nlm.nih.gov/geo/ ).

Techniques: Microarray

Three-step identification of HCC potential biomarkers. First, DEGs using non-fusion integrative method detected. Based on ComBat approach, the batch effect between data from two main microarray platforms (Affymetrix and Illumina), removed. Second, to deal with a more in-depth analysis of HCC expression datasets to identify potential diagnosis and prognosis biomarkers, classification methods and biomarker recognition conducted. Third, to evaluate the diagnostic performance in classifying HCC from normal, the risk score model was developed, and to assess the prognostic value of gene biomarkers, Kaplan–Meier (KM) survival analysis performed.

Journal: MethodsX

Article Title: Detection of key mRNAs in liver tissue of hepatocellular carcinoma patients based on machine learning and bioinformatics analysis

doi: 10.1016/j.mex.2023.102021

Figure Lengend Snippet: Three-step identification of HCC potential biomarkers. First, DEGs using non-fusion integrative method detected. Based on ComBat approach, the batch effect between data from two main microarray platforms (Affymetrix and Illumina), removed. Second, to deal with a more in-depth analysis of HCC expression datasets to identify potential diagnosis and prognosis biomarkers, classification methods and biomarker recognition conducted. Third, to evaluate the diagnostic performance in classifying HCC from normal, the risk score model was developed, and to assess the prognostic value of gene biomarkers, Kaplan–Meier (KM) survival analysis performed.

Article Snippet: In this investigation, which was based on the Illumina and Affymetrix platforms, seven microarray gene expression transcriptome datasets were considered.

Techniques: Microarray, Expressing, Biomarker Discovery, Diagnostic Assay